IGVFFI7505QYGB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0599HJZM(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X056_G5_P073_L003_R3

md5sum

e898ab45cea8cc47ef06033a571188db

Content MD5sum

61daacd27be048b6c3f0047701d5b8a4

File Size

12 GB

Submitted File Name

Multiome_ATAC_X056_G5_L005_P073_S13_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

174477202

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2277IYGW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 8 more samples