IGVFFI7481ZHHF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8437JRRP(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X010_G7_P009_L001_I1

md5sum

e21d0756168765646e0e9ead3a32ea73

Content MD5sum

b3b302651e64246a4e76baa4d7ed8b25

File Size

1.3 GB

Submitted File Name

Multiome_ATAC_X010_G7_L007_P009_S1_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

179470356

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6456NQTK

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples