IGVFFI7460YDMH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9719IXNV(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X034_G2_P034_L002_R1

md5sum

f40e647589846cadc825dece3594c312

Content MD5sum

d692de17bf6ea03015157c404f68f366

File Size

17 GB

Submitted File Name

Multiome_RNA_X034_G2_L002_P034_S26_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

101

Read Count

256137021

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4523IFJQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 80 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 10 more samples