IGVFFI7453IOFR

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI7453IOFR/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI7453IOFR",
10    "aliases": [
11        "buenrostro-bernstein:SS-LS_978_R1"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
20    },
21    "content_md5sum": "b89abf10ed5aec8def9dfe239b349ffc",
22    "content_type": "reads",
23    "controlled_access": true,
24    "creation_timestamp": "2024-08-20T15:10:00.789970+00:00",
25    "externally_hosted": false,
26    "file_format": "fastq",
27    "file_set": {
28        "@id": "/measurement-sets/IGVFDS0387PFFN/",
29        "@type": [
30            "MeasurementSet",
31            "FileSet",
32            "Item"
33        ],
34        "accession": "IGVFDS0387PFFN",
35        "assay_term": {
36            "@id": "/assay-terms/OBI_0002764/",
37            "term_name": "single-cell ATAC-seq"
38        },
39        "file_set_type": "experimental data",
40        "samples": [
41            {
42                "@id": "/in-vitro-systems/IGVFSM6917PRUY/",
43                "@type": [
44                    "InVitroSystem",
45                    "Biosample",
46                    "Sample",
47                    "Item"
48                ],
49                "accession": "IGVFSM6917PRUY",
50                "classifications": [
51                    "cell line",
52                    "pooled cell specimen"
53                ],
54                "sample_terms": [
55                    {
56                        "@id": "/sample-terms/EFO_0004905/",
57                        "status": "released",
58                        "term_name": "induced pluripotent stem cell"
59                    }
60                ],
61                "status": "released",
62                "summary": "Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 179)",
63                "taxa": "Homo sapiens"
64            }
65        ],
66        "status": "released",
67        "summary": "single-cell ATAC-seq (SHARE-seq)"
68    },
69    "file_size": 1024993275,
70    "flowcell_id": "22773CLT3",
71    "gene_list_for": [],
72    "href": "/sequence-files/IGVFFI7453IOFR/@@download/IGVFFI7453IOFR.fastq.gz",
73    "illumina_read_type": "R1",
74    "input_file_for": [],
75    "integrated_in": [],
76    "lab": {
77        "@id": "/labs/jason-buenrostro/",
78        "title": "Jason Buenrostro, Broad"
79    },
80    "loci_list_for": [],
81    "maximum_read_length": 150,
82    "md5sum": "a1be9eae67953c04ce16e381627f0a20",
83    "mean_read_length": 150,
84    "minimum_read_length": 150,
85    "quality_metrics": [],
86    "read_count": 18803684,
87    "read_names": [
88        "Read 1"
89    ],
90    "release_timestamp": "2025-04-10T21:13:33.354106+00:00",
91    "s3_uri": "s3://igvf-restricted-files/2024/08/20/82b4ec9a-0d70-45b4-bcb1-7b420e313cb9/IGVFFI7453IOFR.fastq.gz",
92    "schema_version": "15",
93    "seqspecs": [
94        "/configuration-files/IGVFFI8724UKZD/"
95    ],
96    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
97    "sequencing_platform": {
98        "@id": "/platform-terms/EFO_0022840/",
99        "status": "released",
100        "term_name": "Illumina NovaSeq X"
101    },
102    "sequencing_run": 978,
103    "status": "released",
104    "submitted_by": {
105        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
106        "title": "Siddarth Wekhande"
107    },
108    "submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-949_L2_SS-PKR-179_SS-V1-1st-THIRD_R1.fastq.gz",
109    "summary": "R1 reads from sequencing run 978",
110    "upload_status": "validated",
111    "uuid": "82b4ec9a-0d70-45b4-bcb1-7b420e313cb9"
112}