IGVFFI7413XEWG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9717MUOO(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X030_G1_P029_L003_R3

md5sum

fd4e6812b3983950c9ad14567b01eb55

Content MD5sum

534b0bc1c9106b49849fa114aeeaa640

File Size

12 GB

Submitted File Name

Multiome_ATAC_X030_G1_L001_P029_S29_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

214436884

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9015BILW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 60 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples