IGVFFI7412QRVV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8592RZOJ(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP005_G1_P053_L001_I1

md5sum

5b0b07a958c5ede9d9137344075a4321

Content MD5sum

cbac0e9d1a5dc94a8dca4f13cb4c54f0

File Size

407 MB

Submitted File Name

Multiome_ATAC_RP005_G1_L001_P053_S17_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

53955932

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7341RHCE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples