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IGVFFI7409ZDGW

released
validated
File Set
IGVFDS4415ANKP(lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp9_multi_10x3_NGS1_i1
md5sum
67aabac74ff21aaeb4eccb80365afe95
Content MD5sum
e08ca3a3d193c4e95fb86681b4fd1d23
File Size
180 MB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230707_IGVF9_McGinnis/MULTI/FASTQ/MULTI_3_CMAS_IGVF9_R_S4_L001_I1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JHYLT3
Lane
1
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
10
Read Count
23851474

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
838 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI8726ELZJ, IGVFFI8963NIFY, IGVFFI7409ZDGW, IGVFFI6870TTEL
Ansuman Satpathy, Stanford
1.3 KB
validated