IGVFFI7407AIPR

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1103ZNFY(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X054_G1_P071_L007_R1

md5sum

5abaa72323c81ae47aa088cd105c1c15

Content MD5sum

b0bf95155d9b13bc5359c12a607793eb

File Size

11 GB

Submitted File Name

Multiome_ATAC_X054_G1_L001_P071_S53_L007_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

163266280

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4359VXQA

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) putamen tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 8 more samples