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IGVFFI7404RARD

released
validated
File Set
IGVFDS0956TMWA(single-cell ATAC-seq (SHARE-seq))
Summary
R1 reads from sequencing run 250
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2058_R1
bradley-bernstein:SS-LS_250_R1
buenrostro-bernstein:SS-LS_2058_R1
buenrostro-bernstein:SS-LS_250_R1
md5sum
9599cd8a4bea233ae761ac057d5ebc89
Content MD5sum
228ca652d1151870c2958aa9e32bae2d
File Size
204 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-187_L1_SS-PKR-131_SS-V1-LEFT-HALF_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
250
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
6847400

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 131)

Files Derived From This File

2 items
bam
alignments
GRCm39 unfiltered alignments
Jason Buenrostro, Broad
6.3 GB
validated
bed
fragments
GRCm39 unfiltered fragments
Jason Buenrostro, Broad
887 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI7404RARD, IGVFFI2233SDVD
Jason Buenrostro, Broad
1.2 KB
validated