{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI7403YFYV/",
"@type": [
"SequenceFile",
"File",
"Item"
],
"accession": "IGVFFI7403YFYV",
"aliases": [
"jay-shendure:sc_rep_devCRE_mEBs_oBC_CS1_repB_reseq_10Xlane2_R1"
],
"assay_titles": [
"MPRA (scQer)"
],
"audit": {},
"award": {
"@id": "/awards/HG011966/",
"component": "functional characterization"
},
"content_md5sum": "876c079d784e1569bcf20d9babd59193",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-09T00:59:19.182442+00:00",
"externally_hosted": false,
"file_format": "fastq",
"file_set": {
"@id": "/auxiliary-sets/IGVFDS8758JSUK/",
"accession": "IGVFDS8758JSUK",
"file_set_type": "circularized RNA barcode detection",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM4704LAYE/",
"accession": "IGVFSM4704LAYE",
"classifications": [
"differentiated cell specimen"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"status": "released",
"term_name": "mouse embryonic stem cell"
}
],
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"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane2), male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
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"status": "released",
"term_name": "embryoid body"
},
"taxa": "Mus musculus"
}
],
"status": "released",
"summary": "circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci"
},
"file_size": 1014796235,
"flowcell_id": "AAANJV7HV",
"gene_list_for": [],
"href": "/sequence-files/IGVFFI7403YFYV/@@download/IGVFFI7403YFYV.fastq.gz",
"illumina_read_type": "R1",
"input_file_for": [
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"/tabular-files/IGVFFI0929WRXO/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/jay-shendure/",
"title": "Jay Shendure, UW"
},
"lane": 2,
"loci_list_for": [],
"maximum_read_length": 28,
"md5sum": "0c6f9e56230947ff18757c5157310476",
"mean_read_length": 28,
"minimum_read_length": 28,
"read_count": 46849719,
"release_timestamp": "2024-06-27T00:41:47.211401+00:00",
"s3_uri": "s3://igvf-files/2023/12/09/a05908db-dcaf-4404-86d0-e277c4145143/IGVFFI7403YFYV.fastq.gz",
"schema_version": "14",
"seqspecs": [
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],
"sequencing_kit": "NextSeq 1000/2000 P3 Reagent Kit",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0010963/",
"status": "released",
"term_name": "Illumina NextSeq 2000"
},
"sequencing_run": 2,
"status": "released",
"submitted_by": {
"@id": "/users/73f58e9f-8f5d-4fee-a7cd-dd63c0167e4b/",
"title": "Beth Martin"
},
"submitted_file_name": "/net/shendure/vol8/projects/JBL/GEO_sc_rep_fastqs_nobackup/geo_submission_20221108/sc_rep_devCRE_mEBs/sc_rep_mEB_series_oBC_CS1_repB_lane2_reseq_R1_001.fastq.gz",
"summary": "R1 reads from sequencing run 2",
"upload_status": "validated",
"uuid": "a05908db-dcaf-4404-86d0-e277c4145143"
}