IGVFFI7395GMMQ

released

validated

File Set

IGVFDS0993NTCB(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_FAM3C_Auxin0hrs-FF2-BinE-PCR3-Rep1_S179

md5sum

43fef9304c1674f0b79ef4be83989a90

Content MD5sum

afb240a0ce5a8f2a48f95e2d3b3aeedd

File Size

31 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220308B014_CCND1_SSFA2_FAM3C/fastq_trim/FAM3C-Auxin0hrs-FF2-BinE-PCR3-Rep1_S179_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

TCGCCTTG:ATTG

Average Read Length

Read Count

1433657

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM1344KAZA

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin E for 80-90% expression of FAM3C) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library