Home

IGVFFI7380SYVV

released
validated
File Set
IGVFDS4338ZSWY(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R3 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp15_atac_10x1_NGS1_r3
md5sum
7c8b2824fbdeb8d4bcd676fbcec77a22
Content MD5sum
cad18995b2a0126f650cf2592cf477d7
File Size
12 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/igvf15/ATAC/CMAS17_ATAC1_S3_L002_R3_001.fastq.gz
Checkfiles Version
v14
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
22NHMTLT3
Lane
2
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R3
Average Read Length
50
Read Count
375024635

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days; ... and 10 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
4.7 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI5766MIHS, IGVFFI3692BTHU, IGVFFI7380SYVV, IGVFFI2853SSND
Ansuman Satpathy, Stanford
1.4 KB
validated