{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI7378FTOR/",
"@type": [
"SequenceFile",
"File",
"Item"
],
"accession": "IGVFFI7378FTOR",
"assay_titles": [
"Parse SPLiT-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping"
},
"content_md5sum": "758e9f431056850c21ac1b93015a2875",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-04-30T22:28:42.741383+00:00",
"derived_from": [
"/sequence-files/IGVFFI6266KZFK/"
],
"file_format": "fastq",
"file_set": {
"@id": "/measurement-sets/IGVFDS9445YYVB/",
"accession": "IGVFDS9445YYVB",
"file_set_type": "experimental data",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM2294BOOU/",
"accession": "IGVFSM2294BOOU",
"classifications": [
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],
"disease_terms": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"term_name": "left cerebral cortex"
}
],
"summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples"
}
],
"summary": "Parse SPLiT-seq"
},
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"gene_list_for": [],
"href": "/sequence-files/IGVFFI7378FTOR/@@download/IGVFFI7378FTOR.fastq.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"loci_list_for": [],
"maximum_read_length": 36025,
"md5sum": "e0885572190aceb340f18bf7972e5e8a",
"mean_read_length": 825,
"minimum_read_length": 11,
"read_count": 6901158,
"release_timestamp": "2024-05-08T23:38:44.132941+00:00",
"s3_uri": "s3://igvf-files/2024/04/30/d2f8d65e-e063-4840-9487-a703ae93b593/IGVFFI7378FTOR.fastq.gz",
"schema_version": "14",
"seqspecs": [],
"sequencing_kit": "ONT Ligation Sequencing Kit V14",
"sequencing_platform": "/platform-terms/EFO_0008633/",
"sequencing_run": 1,
"status": "released",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"submitted_file_name": "igvf_b01/nanopore/igvfb01_13H_lig-ss_1.fastq.gz",
"summary": "reads from sequencing run 1",
"upload_status": "validated",
"uuid": "d2f8d65e-e063-4840-9487-a703ae93b593"
}