IGVFFI7367BUVJ

released
validated
File Set
IGVFDS5581ABLR(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin0hrs-FF1-BinE-PCR4_Rep2_S78
md5sum
4b49cffdbb59077e6a5141f0023f3c94
Content MD5sum
4d8ca003699e7d4b4d2efc5985e4b2cf
File Size
14 MB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin0hrs-FF1-BinE-PCR4-Rep2_S78_R1_001.fastq.gz

Sequencing Details

Sequencing Platform
Sequencing Run
1
Index
CCTACCAT:TCTC
Average Read Length
21
Read Count
736463

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin E for 80-90% expression of MYC) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI7367BUVJ
Jesse Engreitz, Stanford
910 B
validated

Attribution