IGVFFI7363ZBRH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1028ZFVQ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X047_G8_P049_L001_R1

md5sum

9efbbcd439da609446b25431a9b0e13d

Content MD5sum

df37b87668972915b1855494f6b78de8

File Size

6.6 GB

Submitted File Name

Multiome_ATAC_X047_G8_L008_P049_S4_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H7VW3DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

201729785

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1698LTIY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples