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INDEXED
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SequenceFile
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IGVFFI7361PLAL
IGVFFI7361PLAL
released
validated
Json view
File Set
IGVFDS6777QJMP
(reporter library targeting random selections genome-wide)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
tim-reddy:starr-seq-dna-fastq-k562-P008-R1
md5sum
a0165f285acb381100aa699ed0007a9e
Content MD5sum
9b5a4a313324175b9de965c70160e729
File Size
6.9 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/raw_data/AIM_1_STARR_seq/K562.starrseq.dna.pool8.R1.fastq.gz
Checkfiles Version
v17
Attribution
Tim Reddy, Duke
(
HG012053
—
Charles Gersbach
)
Sequencing Details
Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
1
Flowcell ID
AACNYKFM5
Lane
1
Sequencing Kit
NextSeq 2000 P3 XLEAP-SBS Reagent Kit
Illumina Read Type
R1
Average Read Length
301
Read Count
49534982
Files Derived From This File
2 items
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI0924DYUU
bam
alignments
GRCh38 unfiltered alignments
Tim Reddy, Duke
6.7 GB
validated
IGVFFI5912UDSB
bam
alignments
custom assembly unfiltered alignments
Tim Reddy, Duke
7.0 GB
validated