Home

IGVFFI7338HLHE

released
validated
File Set
IGVFDS8924NQYH(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp12_rna_10x7_NGS5_i2
md5sum
15a2800470f2c9a107625ab25420be3c
Content MD5sum
0360b412dfff2ac24d5e61701d03ae68
File Size
940 MB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/GEX/FASTQ/GEX7_S7_L005_I2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
225LWLLT3
Lane
5
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I2
Average Read Length
10
Read Count
180752358

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
187 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI8342AIPE, IGVFFI9617UHVG, IGVFFI7573QRFH, IGVFFI7338HLHE
Ansuman Satpathy, Stanford
1.4 KB
validated

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford