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INDEXED
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SequenceFile
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IGVFFI7332NZJQ
IGVFFI7332NZJQ
released
validated
Json view
File Set
IGVFDS6282JZAK
(single-nucleus ATAC-seq (10x multiome))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
chongyuan-luo:ys3c_snATAC_L3_R1
md5sum
eee03a7b45c998dd5b140f4cbeb774db
Content MD5sum
2f7f0f8d67a0abc0924500607c777e43
File Size
14 GB
Submitted File Name
/home/ec2-user/igvf/submit/fastq/year2/multiome/atac/IGVF2ATAC_C_S3_L003_R1_001.fastq.gz
Checkfiles Version
v14
Attribution
Kathrin Plath, UCLA
(
HG012079
—
Chongyuan Luo
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Lane
3
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
101
Read Count
268767647
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM1173KPTS
MultiplexedSample
fibroblast
multiplexed sample: Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 1 day; Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 5 days; ... and 2 more samples
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI8051LVYH
yaml
seqspec
seqspec of IGVFFI6145ZBTE, IGVFFI7332NZJQ, IGVFFI4860ZCFN, IGVFFI2836HZXX
Kathrin Plath, UCLA
1.3 KB
validated