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INDEXED
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SequenceFile
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IGVFFI7314CVEH
IGVFFI7314CVEH
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validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS5558GPUT
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X050_G4_P066_L005_I2
md5sum
43b2b5ec05172b763bbc2d544ec07050
Content MD5sum
8b9d052088965fcca0e390157382ed0a
File Size
364 MB
Submitted File Name
Multiome_RNA_X050_G4_L004_P066_S34_L005_I2_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
2257GYLT3
Lane
5
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I2
Average Read Length
10
Read Count
65115608
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM7568QAEB
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples