IGVFFI7302UQSW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8054AHNJ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X005_G2_P003_L004_R1

md5sum

df03ef6b64155ea00b746aec8e2f3d7a

Content MD5sum

0d23d469c346fe8229d8bd32a80c7c3a

File Size

6.2 GB

Submitted File Name

Multiome_ATAC_X005_G2_L002_P003_S20_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5TH7DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

196696046

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7229CBLF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 87 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples