IGVFFI7270COEC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8683RWTE(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP007_G7_P055_L004_R2

md5sum

f274402e8fd75332814893338019f76f

Content MD5sum

17115a4faf9c0863e4d5f0914368e255

File Size

940 MB

Submitted File Name

Multiome_ATAC_RP007_G7_L007_P055_S19_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

54996227

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4219SNVI

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 81 years) cerebellar cortex tissue; ... and 10 more samples