IGVFFI7240WUIW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7439FTUN(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X035_G7_P035_L003_R2

md5sum

acc49c90d4e09416de6c48a581725324

Content MD5sum

4dae247f2a4564d48b2a443fdf0c87a9

File Size

4.1 GB

Submitted File Name

Multiome_ATAC_X035_G7_L007_P035_S39_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

235267566

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2603ZBHC

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 89 years) substantia nigra tissue; Homo sapiens (female, 84 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples