IGVFFI7233OICO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7684ZRZD(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X037_G8_P037_L001_R3

md5sum

da55789afb8de9e3ca9283f7d7b396e6

Content MD5sum

e8aacf51dd8ae1830c91a3fb2b8acd72

File Size

7.9 GB

Submitted File Name

Multiome_ATAC_X037_G8_L008_P037_S14_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

246419313

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2081GQXM

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 81 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (male, 81 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples