{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI7220NOJR/",
"@type": [
"SequenceFile",
"File",
"Item"
],
"accession": "IGVFFI7220NOJR",
"aliases": [
"bradley-bernstein:SS-LS_2430_R2",
"buenrostro-bernstein:SS-LS_2430_R2"
],
"assay_titles": [
"SHARE-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG011986/",
"component": "mapping"
},
"content_md5sum": "c15a64c5160b2a9b4e163704545894cd",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-02-12T21:53:09.634137+00:00",
"externally_hosted": false,
"file_format": "fastq",
"file_set": {
"@id": "/measurement-sets/IGVFDS8995RRJQ/",
"accession": "IGVFDS8995RRJQ",
"file_set_type": "experimental data",
"samples": [
{
"@id": "/primary-cells/IGVFSM5807QDIF/",
"accession": "IGVFSM5807QDIF",
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"status": "released",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 1), male, Homo sapiens (26 years)",
"taxa": "Homo sapiens"
}
],
"status": "released",
"summary": "single-cell RNA sequencing assay (SHARE-seq)"
},
"file_size": 1681208111,
"gene_list_for": [],
"href": "/sequence-files/IGVFFI7220NOJR/@@download/IGVFFI7220NOJR.fastq.gz",
"illumina_read_type": "R2",
"input_file_for": [
"/matrix-files/IGVFFI3038HSVX/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/jason-buenrostro/",
"title": "Jason Buenrostro, Broad"
},
"loci_list_for": [],
"maximum_read_length": 149,
"md5sum": "ad6adbd7c4e84c1eecf869305840c9e7",
"mean_read_length": 149,
"minimum_read_length": 149,
"read_count": 35032526,
"release_timestamp": "2025-01-14T19:17:13.787093+00:00",
"s3_uri": "s3://igvf-files/2024/02/12/fd76c166-47e7-41ed-b335-ac21dd86b2ea/IGVFFI7220NOJR.fastq.gz",
"schema_version": "14",
"seqspecs": [],
"sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"sequencing_run": 2430,
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-2_L3_SS-PKR-1_SS-V1-1st-THIRD_R2.fastq.gz",
"submitter_comment": "This fastq has already been prefiltered with IGVFDS9814BQOF barcode onlist.",
"summary": "R2 reads from sequencing run 2430",
"upload_status": "validated",
"uuid": "fd76c166-47e7-41ed-b335-ac21dd86b2ea"
}