IGVFFI7197VBPK

released

validated

File Set

IGVFDS6473LUNY(unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus)

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-FACS_Input-PCRrep2_R1

md5sum

447df5c29b488ba71181acd2e86667b8

Content MD5sum

d7bae36c9ec4496665cfcac737b28281

File Size

41 MB

Submitted File Name

220228pPPIF-FFSample-2-D21-pPPIF-Amp-pPPIF-1-1-2-BinAll_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina NextSeq 550

Sequencing Run

1

Illumina Read Type

R1

Index

AATGTTCT:TGAC

Average Read Length

150

Read Count

1874513

Samples

1 item

Accession

Type

Sample Terms

Summary

InVitroSystem

THP-1 cell line, male, Homo sapiens modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library

Attribution

Award

Principal Investigator(s)

Anshul Kundaje, Jesse Engreitz, Marlene Rabinovitch, Lars Steinmetz, Michael Bassik, Thomas Quertermous, Will Greenleaf

Contact P.I.

Lab

Jesse Engreitz, Stanford