IGVFFI7192NCUB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1601UWOC(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X016_G3_P016_L004_I1

md5sum

464d3d015cdd74a61914e1015b52114b

Content MD5sum

ebd6278b4259375c23b558548984f36d

File Size

1.1 GB

Submitted File Name

Multiome_RNA_X016_G3_L011_P016_S3_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

193075677

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2869ZHLZ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 88 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples