IGVFFI7182UTUL

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0978UQYD(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X042_G8_P043_L007_I1

md5sum

d2e54c98311efbf81ff851259e0ac39a

Content MD5sum

cdd21f0dbb15fa518b82edb979e8dd13

File Size

420 MB

Submitted File Name

Multiome_ATAC_X042_G8_L008_P043_S26_L007_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

55160663

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2293QQTO

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples