IGVFFI7170XXNH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9853NWOP(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X013_G1_P011_L003_R1

md5sum

519d81a47ce855c637f96a3cd8cb98f3

Content MD5sum

634ef4d34ddbd9cbaa44adb08f2102d1

File Size

9.4 GB

Submitted File Name

Multiome_ATAC_X013_G1_L001_P011_S19_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

297209575

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4418WKMH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples