IGVFFI7169ZASQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7692IXMX(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X016_G3_P015_L003_R3

md5sum

862a904dde0afdf52f3a3e629f9c5446

Content MD5sum

15d94f783897b758bb448c5c8608a236

File Size

6.8 GB

Submitted File Name

Multiome_ATAC_X016_G3_L003_P015_S17_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

212678437

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2869ZHLZ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 88 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples