IGVFFI7145USHE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4543SUTE(single-nucleus RNA sequencing assay (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X031_G6_P032_L004_R2

md5sum

d44ec9a94cf8509bb5f71e55a7432561

Content MD5sum

3d27eacc86827f2e03e3e396ef485342

File Size

16 GB

Submitted File Name

Multiome_RNA_X031_G6_L006_P032_S48_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

101

Read Count

304002970

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2234VVAF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples