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IGVFFI7093KEGU

released
validated
File Set
IGVFDS8645IDXO(single-cell ATAC-seq (SHARE-seq))
Summary
R1 reads from sequencing run 170
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_170_R1
bradley-bernstein:SS-LS_2059_R1
buenrostro-bernstein:SS-LS_170_R1
buenrostro-bernstein:SS-LS_2059_R1
md5sum
b704648cb2d53db5e14cb1f024117069
Content MD5sum
2885f88806200693478e21ef6e30c925
File Size
1.1 GB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-188_L1_SS-PKR-131_2022-APRIL-R1-PLATE2-ENTIRE-PLATE_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
170
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
38147532

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 131)

Files Derived From This File

2 items
bam
alignments
GRCm39 unfiltered alignments
Jason Buenrostro, Broad
6.3 GB
validated
bed
fragments
GRCm39 unfiltered fragments
Jason Buenrostro, Broad
887 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI7093KEGU, IGVFFI5827ESIJ
Jason Buenrostro, Broad
1.2 KB
validated