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INDEXED
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SequenceFile
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IGVFFI7071UAGG
IGVFFI7071UAGG
released
validated
Json view
File Set
IGVFDS7161RJGI
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp12_atac_10x6_NGS1_r1
md5sum
82aceba41e3800b527c8d3f8dec4af90
Content MD5sum
f9215f8bd72b1cbaeda4fc7dcdd67cd2
File Size
6.0 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S10_L003_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
225JTGLT3
Lane
7
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
50
Read Count
197871854
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM5574TAPU
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI5085ZLUQ
tsv
fragments
fragments
Ansuman Satpathy, Stanford
6.8 GB
validation exempted
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI5171OICI
yaml
seqspec
seqspec of IGVFFI1812ZLAL, IGVFFI1889IRQS, IGVFFI9613PAWJ, IGVFFI7071UAGG
Ansuman Satpathy, Stanford
1.4 KB
validated