IGVFFI7068JBEC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6692YMQJ(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X049_G6_P065_L007_I1

md5sum

851308a7008e1d5a96a1e766a3734bab

Content MD5sum

fa5772d273579fe8fd7ad4946341a9d7

File Size

539 MB

Submitted File Name

Multiome_ATAC_X049_G6_L006_P065_S28_L007_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

76130228

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0899PTMN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (male, 63 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; ... and 8 more samples