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INDEXED
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SequenceFile
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IGVFFI7039AOYP
IGVFFI7039AOYP
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS9683XLIM
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X025_G6_P024_L004_R2
md5sum
6fa5cb8c21ef0d78845f7167358b24fb
Content MD5sum
a0e0e1b12792b02bdc08ebb3da886afe
File Size
11 GB
Submitted File Name
Multiome_RNA_X025_G6_L006_P024_S52_L004_R2_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
HV7TNDSX5
Lane
4
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
101
Read Count
197078273
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM6541UOZS
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 87 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples