IGVFFI7032YABI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3229AGXN(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X018_G4_P017_L001_R2

md5sum

202dece4ec43988c97a524579d0a2803

Content MD5sum

edf39c0055f4eb4670b809536e337b18

File Size

3.5 GB

Submitted File Name

Multiome_ATAC_X018_G4_L004_P017_S6_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7NNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

204017772

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7256WFWF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 73 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples