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INDEXED
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SequenceFile
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IGVFFI7019QIXG
IGVFFI7019QIXG
released
validated
Json view
File Set
IGVFDS3634TPOY
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp9_rna_10x1_NGS3_r1
md5sum
931a89eff225d3e82dd564f9d2a26797
Content MD5sum
27d8e6d73cda5aa7b347b63aa08c2694
File Size
7.6 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230707_IGVF9_McGinnis/GEX/FASTQ/GEX_1_CMAS_IGVF9_R_S7_L003_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JHYLT3
Lane
3
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
399244654
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM9678IFHW
MultiplexedSample
B cell
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI6188HAUP
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
220 MB
validated
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI3482OQHE
yaml
seqspec
seqspec of IGVFFI1987SXGY, IGVFFI7019QIXG, IGVFFI1953XXJJ, IGVFFI0497MYVR
Ansuman Satpathy, Stanford
1.4 KB
validated
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford