IGVFFI6999NFUC

released

validated

File Set

IGVFDS8139AHSF(CRISPR interference FlowFISH screen sorted on the expression of NFKBIA integrating a guide (sgRNA) library targeting phenotype-associated variants genome-wide associated with blood pressure)

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

guillaume-lettre:BP_screen_KRAB_FR_R1_2_read1

md5sum

fa1d17d23a6a2fa3f56fa7346deb56a9

Content MD5sum

9dd093797399882e65fea05c11e1cb95

File Size

293 MB

Submitted File Name

/home/lokensin/projects/rrg-glettre/sequencing_datastore/raw_data/CRISPR_IGVF_20230720/samples/NS.X0085.005.IndexR1_28.2BPR1_FR_R1.fastq.gz

Checkfiles Version

Legacy version of checkfiles

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Sequencing Kit

NovaSeq 6000 SP Reagent Kit v1.5

Illumina Read Type

Average Read Length

151

Read Count

7001931

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM3369LGZJ

InVitroSystem

TeloHAEC

TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library