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INDEXED
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SequenceFile
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IGVFFI6998XSDD
IGVFFI6998XSDD
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validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS0247BVMI
(single-nucleus ATAC-seq (10x multiome))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_ATAC_RP006_G5_P055_L004_R2
md5sum
238554ee3411e7160d12ad3d502f77e5
Content MD5sum
e291e839b71838c9eb278f7986f44baa
File Size
1.0 GB
Submitted File Name
Multiome_ATAC_RP006_G5_L005_P055_S9_L004_R2_001.fastq.gz
Checkfiles Version
v20
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JGVLT3
Lane
4
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R2
Average Read Length
24
Read Count
59095768
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM3715NVPJ
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF