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INDEXED
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SequenceFile
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IGVFFI6992PVTA
IGVFFI6992PVTA
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS9206CEMZ
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X030_G7_P030_L002_R2
md5sum
ff8183903ba9df351a3eb31b32d972af
Content MD5sum
dc5970977b9d433333d7a2b605eb91fe
File Size
14 GB
Submitted File Name
Multiome_RNA_X030_G7_L007_P030_S27_L002_R2_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
HV7VHDSX5
Lane
2
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
101
Read Count
260913396
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM0722WVNE
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 60 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples