Home

IGVFFI6991OWAG

released
validated
File Set
IGVFDS6729QWDJ(single-cell RNA sequencing assay (SHARE-seq))
Summary
R1 reads from sequencing run 2
File Format
fastq
Content Type
reads
Aliases
buenrostro-bernstein:surya-DSS05-prim3-RNA.R1.fastq.gz
md5sum
a21d578e846cf208b66b3f0dc95a5162
Content MD5sum
ae3495200a8d7e4733ba5937e849abad
File Size
4.4 GB
Submitted File Name
gs://sw-igvf-submission/surya-mouse-colitis/submit-fqs/DSS05-prim3-RNA.R1.fastq.gz
Checkfiles Version
v14
Submitter Comment
DSS05-prim-12k-2_P1.56,DSS05-prim-12k-3_P1.41,DSS05-prim-12k-4_P1.50
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
2
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
137761391

Samples

1 item
Accession
Type
Sample Terms
Summary
PrimaryCell
Mus musculus C57BL/6J colon cell

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
111 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI2250IDXN, IGVFFI6991OWAG, IGVFFI9584NUBV
Jason Buenrostro, Broad
1.2 KB
validated