IGVFFI6981QUKP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7572LACU(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X016_G1_P016_L004_R1

md5sum

8010fd580d7f009b77160f229df4fb7a

Content MD5sum

5111242ecb68479180c263358d0613f2

File Size

6.0 GB

Submitted File Name

Multiome_RNA_X016_G1_L009_P016_S1_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

292092027

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1153HQLG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 88 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples