IGVFFI6977YZQX

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI6977YZQX/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI6977YZQX",
10    "aliases": [
11        "ansuman-satpathy:igvf_exp3_multi_10x3_NGS1_i1"
12    ],
13    "assay_titles": [
14        "10x multiome with MULTI-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "content_md5sum": "a48c664a505bb567452a376948b8ca2f",
22    "content_type": "reads",
23    "controlled_access": false,
24    "creation_timestamp": "2024-07-21T23:30:42.445207+00:00",
25    "externally_hosted": false,
26    "file_format": "fastq",
27    "file_set": {
28        "@id": "/auxiliary-sets/IGVFDS5693MIIK/",
29        "@type": [
30            "AuxiliarySet",
31            "FileSet",
32            "Item"
33        ],
34        "accession": "IGVFDS5693MIIK",
35        "controlled_access": false,
36        "data_use_limitation_summaries": [
37            "No limitations"
38        ],
39        "file_set_type": "lipid-conjugated oligo sequencing",
40        "samples": [
41            {
42                "@id": "/multiplexed-samples/IGVFSM7454SJSO/",
43                "@type": [
44                    "MultiplexedSample",
45                    "Sample",
46                    "Item"
47                ],
48                "accession": "IGVFSM7454SJSO",
49                "classifications": [
50                    "cell line",
51                    "differentiated cell specimen",
52                    "multiplexed sample"
53                ],
54                "disease_terms": [],
55                "modifications": [],
56                "sample_terms": [
57                    {
58                        "@id": "/sample-terms/EFO_0001187/",
59                        "status": "released",
60                        "term_name": "HepG2"
61                    },
62                    {
63                        "@id": "/sample-terms/EFO_0003045/",
64                        "status": "released",
65                        "term_name": "H9"
66                    },
67                    {
68                        "@id": "/sample-terms/EFO_0009747/",
69                        "status": "released",
70                        "term_name": "GM25256 (WTC-11)"
71                    }
72                ],
73                "status": "released",
74                "summary": "multiplexed sample: Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 15 days; Homo sapiens (male) HepG2 cell line grown in DMEM without serum; ... and 10 more samples",
75                "taxa": "Homo sapiens",
76                "treatments": []
77            }
78        ],
79        "status": "released",
80        "summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
81    },
82    "file_size": 157668904,
83    "flowcell_id": "223JJCLT3",
84    "gene_list_for": [],
85    "href": "/sequence-files/IGVFFI6977YZQX/@@download/IGVFFI6977YZQX.fastq.gz",
86    "illumina_read_type": "I1",
87    "input_file_for": [
88        "/tabular-files/IGVFFI7181BPSL/"
89    ],
90    "integrated_in": [],
91    "lab": {
92        "@id": "/labs/ansuman-satpathy/",
93        "title": "Ansuman Satpathy, Stanford"
94    },
95    "lane": 1,
96    "loci_list_for": [],
97    "maximum_read_length": 10,
98    "md5sum": "ac8ea71631220c317de86ad3e8cd8d51",
99    "mean_read_length": 10,
100    "minimum_read_length": 10,
101    "quality_metrics": [],
102    "read_count": 21579593,
103    "release_timestamp": "2025-03-07T01:11:00.159294+00:00",
104    "s3_uri": "s3://igvf-files/2024/07/21/81e752b0-5e58-460b-8ffc-97fc2ea0ef0d/IGVFFI6977YZQX.fastq.gz",
105    "schema_version": "15",
106    "seqspecs": [
107        "/configuration-files/IGVFFI8531NIMX/"
108    ],
109    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
110    "sequencing_platform": {
111        "@id": "/platform-terms/EFO_0022840/",
112        "status": "released",
113        "term_name": "Illumina NovaSeq X"
114    },
115    "sequencing_run": 1,
116    "status": "released",
117    "submitted_by": {
118        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
119        "title": "Christopher Mcginnis"
120    },
121    "submitted_file_name": "/oak/stanford/projects/igvf/Projects/230522_IGVF3_McGinnis/MULTI/FASTQ/MULTI_3_S7_L001_I1_001.fastq.gz",
122    "summary": "I1 reads from sequencing run 1",
123    "upload_status": "validated",
124    "uuid": "81e752b0-5e58-460b-8ffc-97fc2ea0ef0d"
125}