IGVFFI6922GMNK

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI6922GMNK/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI6922GMNK",
    "aliases": [
        "buenrostro-bernstein:surya-APC-SHARE-02-5k-ATAC.R1.fastq.gz"
    ],
    "assay_titles": [
        "SHARE-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011986/",
        "component": "mapping"
    },
    "checkfiles_version": "v14",
    "content_md5sum": "a93bab951b5168cd4cf064090e905a56",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2025-02-07T02:10:02.997891+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS6123LRGF/",
        "accession": "IGVFDS6123LRGF",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/tissues/IGVFSM6844DNNZ/",
                "accession": "IGVFSM6844DNNZ",
                "classifications": [
                    "tissue"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/UBERON_0001155/",
                        "status": "released",
                        "term_name": "colon"
                    }
                ],
                "status": "preview",
                "summary": "colon tissue, Mus musculus C57BL/6J",
                "taxa": "Mus musculus"
            }
        ],
        "status": "preview",
        "summary": "single-cell ATAC-seq (SHARE-seq)"
    },
    "file_size": 1477323826,
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI6922GMNK/@@download/IGVFFI6922GMNK.fastq.gz",
    "illumina_read_type": "R1",
    "input_file_for": [
        "/tabular-files/IGVFFI5029GJRL/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/jason-buenrostro/",
        "title": "Jason Buenrostro, Broad"
    },
    "loci_list_for": [],
    "maximum_read_length": 30,
    "md5sum": "7f0d13fa892e77d3c9da5349e67192ca",
    "mean_read_length": 29.98,
    "minimum_read_length": 20,
    "quality_metrics": [],
    "read_count": 55045918,
    "read_names": [
        "Read 1"
    ],
    "s3_uri": "s3://igvf-files/2025/02/07/809dd07e-2f7d-417c-9cca-18ce7b28c1f7/IGVFFI6922GMNK.fastq.gz",
    "schema_version": "15",
    "seqspecs": [],
    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0008637/",
        "status": "released",
        "term_name": "Illumina NovaSeq 6000"
    },
    "sequencing_run": 1,
    "status": "preview",
    "submitted_by": {
        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
        "title": "Siddarth Wekhande"
    },
    "submitted_file_name": "gs://sw-igvf-submission/surya-mouse-colitis/submit-fqs/APC-SHARE-02-5k-ATAC.R1.fastq.gz",
    "submitter_comment": "APC-SHARE-02-5k_P1.86",
    "summary": "R1 reads from sequencing run 1",
    "upload_status": "validated",
    "uuid": "809dd07e-2f7d-417c-9cca-18ce7b28c1f7"
}