IGVFFI6899TZVT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2994XKQR(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X045_G6_P045_L001_R1

md5sum

28958805f2b1406d49c347550eb1895f

Content MD5sum

c4a631a3d0a89b6f96d44be159ad8810

File Size

7.2 GB

Submitted File Name

Multiome_ATAC_X045_G6_L006_P045_S10_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

224262213

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0962IVEP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples