IGVFFI6870NLHM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8868CTRE(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X016_G5_P016_L004_R1

md5sum

6b6afeed2f9e55138d119fa83d2a5f2a

Content MD5sum

89cb17901a4786dd333add0d5115ec79

File Size

4.3 GB

Submitted File Name

Multiome_RNA_X016_G5_L013_P016_S5_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

208148322

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8217OQRS

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 88 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples