IGVFFI6845SETM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1869XCPD(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP018_G2_P063_L007_I1

md5sum

68fe25c836b8ed552ba1ea44280fef7c

Content MD5sum

d833053baf1451608c9333da279ef135

File Size

388 MB

Submitted File Name

Multiome_ATAC_RP018_G2_L002_P063_S30_L007_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

52595929

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9675WPZF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples