IGVFFI6836JBLF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4780LCVB(single-nucleus RNA sequencing assay (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X028_G3_P028_L004_R2

md5sum

572913d8e459fedd27e3084584981239

Content MD5sum

ee677d49950e2817b0191d530a315398

File Size

11 GB

Submitted File Name

Multiome_RNA_X028_G3_L003_P028_S20_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

217736091

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7150ADFP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples