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SequenceFile
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IGVFFI6831RWSR
IGVFFI6831RWSR
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS1618GVTK
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X047_G8_P050_L002_R2
md5sum
843d182c847ece8d0172a85d533622cb
Content MD5sum
f60708b15d4b0c2070e6bc178a29daad
File Size
9.1 GB
Submitted File Name
Multiome_RNA_X047_G8_L008_P050_S16_L002_R2_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
H7VW3DSX7
Lane
2
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
101
Read Count
158439539
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM1698LTIY
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples