IGVFFI6819TOSW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1602DOZK(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP031_G3_P079_L008_R1

md5sum

d845edddd70968e638d4c58921719dec

Content MD5sum

e55367e530eada982e2d2de91806a3c0

File Size

2.9 GB

Submitted File Name

Multiome_ATAC_RP031_G3_L003_P079_S11_L008_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19U7CA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

47863729

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7198HQDQ

MultiplexedSample

posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease; ... and 6 more samples