IGVFFI6806TMBG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5487GIYJ(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X031_G7_P031_L001_R3

md5sum

b179ca4582feb9b38f8329bce57362f0

Content MD5sum

1d0e16fa664ba504e3fd712f8606bed8

File Size

14 GB

Submitted File Name

Multiome_ATAC_X031_G7_L007_P031_S13_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

247974618

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9556BXER

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples